diff --git a/src/amd/vulkan/radv_shader.c b/src/amd/vulkan/radv_shader.c
index 955d1b93184..d942fd14773 100644
--- a/src/amd/vulkan/radv_shader.c
+++ b/src/amd/vulkan/radv_shader.c
@@ -1309,7 +1309,8 @@ shader_variant_compile(struct radv_device *device,
 	options->address32_hi = device->physical_device->rad_info.address32_hi;
 	options->has_ls_vgpr_init_bug = device->physical_device->rad_info.has_ls_vgpr_init_bug;
 	options->use_ngg_streamout = device->physical_device->use_ngg_streamout;
-	options->enable_mrt_output_nan_fixup = device->instance->enable_mrt_output_nan_fixup;
+	options->enable_mrt_output_nan_fixup = module && !module->nir &&
+					       device->instance->enable_mrt_output_nan_fixup;
 	options->debug.func = radv_compiler_debug;
 	options->debug.private_data = &debug_data;